There are very few "absolutes" for using MathType. That is, not very many times when we can say "absolutely do this" or "absolutely don't do that". Most of those are pretty obvious, like "Don't use MathType when sitting with your laptop on a floatie in the middle of a swimming pool." No one needs to tell you not to do that; it's pretty obvious.
The things you'll see on this page are not procedure; they're technique. However, we can say these techniques have been developed either as a result of using MathType literally for decades or as a result of seeing many customers writing in with issues caused by having used a technique other than what you'll see here.
So it's up to you — if something's working for you, it's probably an OK technique. The techniques here are intended to provide help when something doesn't go right, or better yet, to prevent things from going wrong in the first place.
All "power" MathType users, and all users of MathType for any time at all, know there are often several ways to get anything done in MathType. For example, if you want to insert a Greek letter mu into an equation, you could click to expand the lower case Greek letters palette, then click the icon for mu. You could also press the keyboard shortcut Ctrl+G (⌘+G Mac), followed by the M key. There's nothing inherently right or wrong about either method.
What about changing the appearance of an equation created with MathType's default configuration? For fonts, that's Times New Roman, 12pt. Many of our customers are faculty members who use MathType in a word processor and a presentation application during the same lesson preparation period. So here's a common scenario…
You're working in Microsoft Word to create a lesson handout to print and give to your students in class. You're also working on your lesson slides, using Microsoft PowerPoint. You've inserted an equation into the Word document. You want to use this equation also on one of your slides.
In this scenario, there are at least two decisions to make:
Let's defer decision #1 to the section of this page dealing with copy & paste. For the rest of this part, we'll deal with decision #2.
You've no doubt noticed when you add the equation to your slide, there are 8 "resizing handles", visible as white circles:

It's very tempting to just click the circle in one of the corners and drag until the equation "looks about right". We caution against that for 3 very practical reasons and 1 just-as-practical, but less common, reason.

We recommend when resizing equations, don't use the resizing handles. Rather, use MathType's Size menu. Look for the Define command at the bottom of the menu. If you click Define, you'll see something like this:

We'll not go into details of using the Define Sizes dialog here, because those details are fully described elsewhere in the docs. What we would like to suggest here is to set Full size to be equal to the size of the font nearest the equation on the slide. In the case of our example equation, that's 20pt. (If you want it a little larger for emphasis, or maybe a little smaller than the text so the large equation will fit onto the slide, the point [pun sort of intended] is to set Define Sizes to be exactly the size you need, not one you've guessed at by dragging a corner.)
Wouldn't that take longer though — going through this process every time you use an equation from Word?
Yes it would. That's why we have another suggestion: use preference files. In MathType, a preference file gives you a way to easily apply different, pre-defined settings to an equation. The settings contained in a preference file are
We recommend saving one preference file with the spacing, styles (fonts), and sizes you're using in Word, and a second preference file appropriate for PowerPoint. The most recent 4 preference files you've used will always be at the bottom of MathType's Preferences menu, so after you place the equation from Word into PowerPoint, apply the appropriate preference file to the equation. When you go back to Word, switch to the preference file you're using in Word.
Here's how our slide looks with a 20pt equation:

In some applications, that's your only choice — copy & paste. However, the applications our customers most commonly use with MathType are Microsoft Office (Word and PowerPoint) and the Apple applications formerly known as iWork (Pages, Keynote, Numbers). All of these applications have an integrated means of inserting MathType equations other than copy & paste. (Note in many cases you can also select an equation in MathType, point to it with the mouse, click, then drag the equation over to wherever you want it to be. That's called drag & drop, and whenever we refer to copy & paste on this page, we mean both copy & paste and drag & drop unless otherwise noted.)
It's so easy to copy & paste though; why would I want to do it any other way?
There are sometimes issues caused by copy & paste that aren't caused by using the Insert Equation command (or button on the MathType tab), but those don't always happen. What does always happen though, is it takes you more time to copy & paste than it takes to use the command or button to insert an equation. People tend to think copy & paste is faster; it's not.
Here are the steps (we'll use Command in the table to mean either the Insert Equation command in Pages or its siblings or clicking one of the Insert Equation buttons in Word or PowerPoint):
| Copy & paste (assuming you open MathType and keep it open) | Command |
|---|---|
|
|
So it takes 2 more steps to copy & paste than it does to click the button and close MathType every time if you keep the MathType window open after the first copy & paste (or 3 if you have to click inside the document).


For the most part, if a font appears in the list of fonts available in MathType, it's OK to use:

Still, there are 2 types of fonts you should completely avoid in MathType, and one other category you should avoid unless you completely know what those fonts are for.
What's the big deal? You type, you print, you're finished. Word's pretty easy to use, but the way it manages leading (the distance from one line of text to another) is a source of irritation to some because it doesn't look quite up to textbook quality.
Here's a simple example. Notice the uneven leading in this paragraph:

This is mostly, but not totally, Word's fault. MathType contributes to it by the overall bounding box of its equation/expression "objects". ("Objects" is the term for MathType equations, Excel charts, and other editable items inserted into a Word document.) You can see the bounding box of an equation by clicking it once to select it:

Note it's not possible to select multiple equations in a document. This is a composite screen shot to show the relationship between multiple equation bounding boxes in a single paragraph.
Standard single-spaced lines contain 20% of padding, so a paragraph with 12pt text, for example, would have 14.4pt spacing between the baseline of one line and the baseline of the next line. The default for the Normal style in Word's Normal template is not Single spacing in a paragraph, but "Multiple: 1.08". So to find the normal spacing (in Word) for that 12pt paragraph, multiply by 1.2, then again by 1.08. That gives 15.552, so in the Paragaph dialog it would be "Exactly 15.6pt".
That's where MathType complicates matters. Rather than repeat information contained elsewhere in our documentation, we have another article that goes into more detail about "Exact" paragraph line spacing, and how to determine what the proper spacing should be.
Here we've adjusted the spacing to be exactly the size of our font·(1.2)·(1.08):

We need to account for the height of the equations though, so now we've adjusted our example paragraph considering everything, and the leading is more even:

There are a few key points concerning MathType equation numbers. If you understand these points, it's much easier to use numbered equations and references effectively.
Here are a few scenarios where using the information mentioned above can direct MathType to treat display equations and their numbers and references so as to not create any surprises for you:
MathType's Insert Right-numbered button in Word inserts an equation centered on the line, with the equation number right-aligned with the right margin. Your style guide specifies display equations positioned 1 inch from the left margin.
Your document was initially a 2-column document and you decide to switch to single-column layout. Now your display equations and equation numbers aren't positioned correctly.
One of your numbered "equations" is actually 3 equations, each on its own line, that you created in MathType as one equation object. The equation number is vertically centered on this equation group, but you want the number aligned with the 3rd equation (the bottom one) in the group.
Rather than address these scenarios step-by-step, let's look at items number 3 and 4 from the list above, and you can apply that general knowledge to your own numbered equation scenario.
We have details on the MTDisplayEquation style in another article, but it's important enough to repeat this statement from the article: the MTDisplayEquation style is not included by default on Word's Style Gallery, nor does it exist before you insert a display equation into the current document. The article explains how to open the style and adjust its definition to suit your needs. The first 2 scenarios described above can be resolved by properly changing this style to conform to your needs.
In MathType's Format menu, there are 8 alignment commands that are normally grayed-out. Chances are, three of these you've probably never used.

With only one line in the MathType equation editing workspace, these 8 commands will be grayed-out. They'll be enabled once you create a pile (i.e., multiple lines inside MathType) or add a matrix to the equation.
The top group commands (left, center, right, etc.) are useful, but not here. We're concerned with the next group of 3 — Align at Top, Align at Center (actually it should say "Middle" rather than "Center", but it says what it says), and Align at Bottom. In the scenario mentioned above, you'd want to apply Align at Bottom to the pile of 3 equations. These 3 commands control the position of the equation object in relation to the surrounding text, so if we apply Align at Bottom, it will cause the equation number to be aligned with the bottom equation in the group of 3 equations within our equation object.
The bottom 3 rows of MathType's toolbar comprise the customizable toolbar, identified by the red bar below:

What you see on the customizable toolbar when you install MathType are only examples. Remove what you don't need; add what you do need. If you want to completely eliminate a tab, you can't remove the tab but you can remove all the contents on the tab and you can rename the tab. You cannot add more buttons to a tab beyond its capability, which is 8 large buttons and 20 small buttons. There is no difference between large and small buttons other than the size of the button.
There are multiple ways to add content to the customizable toolbar:
You can remove expressions from the customizable toolbar on Windows by pressing Alt and dragging the expression to any of the dark gray areas (such as between Tab 8 and Tab 9 in the screen shot above) or completely outside the MathType window. If you drop the expression where you see the "no" symbol —
— MathType will remove it from the toolbar. On both Mac and Windows, you can right-click (or Ctrl-click) and choose Delete. There is no undo for this, so once you remove an expression from the customizable toolbar, if you decide you want it back you'll have to re-create it.
We have more information about MathType's customizable toolbar in the MathType documentation.